IL_5AJ0_194

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

5AJ0|1|B1|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_194 not in the Motif Atlas

Homologous match to IL_4V88_387

Geometric discrepancy: 0.1497

The information below is about IL_4V88_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77761.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5AJ0|1|B1|G|41
5AJ0|1|B1|A|42
5AJ0|1|B1|U|43
5AJ0|1|B1|U|44
5AJ0|1|B1|A|45
5AJ0|1|B1|A|46
5AJ0|1|B1|G|47
*
5AJ0|1|B1|C|479
5AJ0|1|B1|G|480
5AJ0|1|B1|C|481

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BX

40S ribosomal protein S23