IL_5AJ0_197
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UACGCA*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 5AJ0|1|B1|C|65
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ0_197 not in the Motif Atlas
- Homologous match to IL_4V88_390
- Geometric discrepancy: 0.231
- The information below is about IL_4V88_390
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87517.1
- Basepair signature
- cWW-L-R-L-R-tHS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5AJ0|1|B1|U|63
5AJ0|1|B1|A|64
5AJ0|1|B1|C|65
5AJ0|1|B1|G|66
5AJ0|1|B1|C|67
5AJ0|1|B1|A|68
*
5AJ0|1|B1|U|81
5AJ0|1|B1|G|82
5AJ0|1|B1|A|83
5AJ0|1|B1|A|84
5AJ0|1|B1|A|85
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain AW
- 60S ribosomal protein L24
- Chain BG
- 40S ribosomal protein S6
- Chain BY
- 40S ribosomal protein S24
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