IL_5AJ0_200

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

5AJ0|1|B1|G|113, 5AJ0|1|B1|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_200 not in the Motif Atlas

Geometric match to IL_6JXM_001

Geometric discrepancy: 0.2351

The information below is about IL_6JXM_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

5AJ0|1|B1|U|112
5AJ0|1|B1|G|113
5AJ0|1|B1|G|114
5AJ0|1|B1|U|115
*
5AJ0|1|B1|A|348
5AJ0|1|B1|A|349

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

40S ribosomal protein S4, Y isoform 1

Chain BI

40S ribosomal protein S8

Chain BL

40S ribosomal protein S11