3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GGG*CGAUUC
Length
9 nucleotides
Bulged bases
5AJ0|1|B1|U|428
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5AJ0_211 not in the Motif Atlas
Homologous match to IL_4V88_404
Geometric discrepancy: 0.1596
The information below is about IL_4V88_404
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_11347.3
Basepair signature
cWW-L-R-L-cWW-L
Number of instances in this motif group
2

Unit IDs

5AJ0|1|B1|G|411
5AJ0|1|B1|G|412
5AJ0|1|B1|G|413
*
5AJ0|1|B1|C|424
5AJ0|1|B1|G|425
5AJ0|1|B1|A|426
5AJ0|1|B1|U|427
5AJ0|1|B1|U|428
5AJ0|1|B1|C|429

Current chains

Chain B1
18S ribosomal RNA

Nearby chains

Chain BE
40S ribosomal protein S4, Y isoform 1
Chain BJ
40S ribosomal protein S9
Chain BX
40S ribosomal protein S23

Coloring options:


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