IL_5AJ0_228
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UAC*GAAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ0_228 not in the Motif Atlas
- Geometric match to IL_4WF9_012
- Geometric discrepancy: 0.3766
- The information below is about IL_4WF9_012
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_49061.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
5AJ0|1|B1|U|801
5AJ0|1|B1|A|802
5AJ0|1|B1|C|803
*
5AJ0|1|B1|G|860
5AJ0|1|B1|A|861
5AJ0|1|B1|A|862
5AJ0|1|B1|U|863
5AJ0|1|B1|A|864
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BH
- 40S ribosomal protein S7
- Chain BL
- 40S ribosomal protein S11
- Chain BW
- 40S ribosomal protein S15a
- Chain BX
- 40S ribosomal protein S23
Coloring options: