IL_5AJ0_230
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ0_230 not in the Motif Atlas
- Geometric match to IL_4V88_425
- Geometric discrepancy: 0.284
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5AJ0|1|B1|G|807
5AJ0|1|B1|A|808
5AJ0|1|B1|A|809
5AJ0|1|B1|A|810
5AJ0|1|B1|A|811
5AJ0|1|B1|A|812
5AJ0|1|B1|A|813
5AJ0|1|B1|U|814
5AJ0|1|B1|U|815
*
5AJ0|1|B1|A|849
5AJ0|1|B1|C|850
5AJ0|1|B1|C|851
5AJ0|1|B1|G|852
5AJ0|1|B1|C|853
5AJ0|1|B1|A|854
5AJ0|1|B1|G|855
5AJ0|1|B1|C|856
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4, Y isoform 1
- Chain BJ
- 40S ribosomal protein S9
- Chain BL
- 40S ribosomal protein S11
- Chain BW
- 40S ribosomal protein S15a
Coloring options: