IL_5AJ0_241
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 5AJ0|1|B1|C|1153, 5AJ0|1|B1|U|1155, 5AJ0|1|B1|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ0_241 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.1236
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5AJ0|1|B1|C|1091
5AJ0|1|B1|G|1092
5AJ0|1|B1|A|1093
*
5AJ0|1|B1|U|1152
5AJ0|1|B1|C|1153
5AJ0|1|B1|U|1154
5AJ0|1|B1|U|1155
5AJ0|1|B1|U|1156
5AJ0|1|B1|G|1157
5AJ0|1|B1|G|1158
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BC
- 40S ribosomal protein S2
- Chain BL
- 40S ribosomal protein S11
- Chain BN
- 40S ribosomal protein S13
- Chain BW
- 40S ribosomal protein S15a
- Chain BX
- 40S ribosomal protein S23
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