IL_5AJ0_242
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAU*GCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ0_242 not in the Motif Atlas
- Geometric match to IL_4V88_438
- Geometric discrepancy: 0.1197
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5AJ0|1|B1|C|1098
5AJ0|1|B1|G|1099
5AJ0|1|B1|A|1100
5AJ0|1|B1|U|1101
*
5AJ0|1|B1|G|1131
5AJ0|1|B1|C|1132
5AJ0|1|B1|A|1133
5AJ0|1|B1|G|1134
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BA
- 40S ribosomal protein SA
- Chain BB
- 40S ribosomal protein S3a
- Chain BN
- 40S ribosomal protein S13
- Chain BR
- 40S ribosomal protein S17-like
- Chain Ba
- 40S ribosomal protein S26
Coloring options: