IL_5AJ0_246

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

5AJ0|1|B1|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_246 not in the Motif Atlas

Geometric match to IL_4KYY_002

Geometric discrepancy: 0.3177

The information below is about IL_4KYY_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5AJ0|1|B1|U|1202
5AJ0|1|B1|G|1203
5AJ0|1|B1|A|1204
*
5AJ0|1|B1|U|1694
5AJ0|1|B1|A|1695
5AJ0|1|B1|C|1696
5AJ0|1|B1|A|1697

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain An

60S ribosomal protein L41

Chain BC

40S ribosomal protein S2

Chain Ba

40S ribosomal protein S26