IL_5AJ0_252

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_252 not in the Motif Atlas

Geometric match to IL_4KYY_001

Geometric discrepancy: 0.138

The information below is about IL_4KYY_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

5AJ0|1|B1|G|1270
5AJ0|1|B1|C|1271
5AJ0|1|B1|C|1272
*
5AJ0|1|B1|G|1510
5AJ0|1|B1|U|1511
5AJ0|1|B1|C|1512

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BK

40S ribosomal protein S10

Chain Bd

40S ribosomal protein S29

Chain Bf

Ubiquitin-40S ribosomal protein S27a