IL_5AJ0_260

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_260 not in the Motif Atlas

Homologous match to IL_4V88_453

Geometric discrepancy: 0.3128

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

5AJ0|1|B1|U|1347
5AJ0|1|B1|G|1348
5AJ0|1|B1|G|1349
*
5AJ0|1|B1|C|1380
5AJ0|1|B1|G|1381
5AJ0|1|B1|A|1382

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BA

40S ribosomal protein SA

Chain BC

40S ribosomal protein S2

Chain BD

40S ribosomal protein S3

Chain BR

40S ribosomal protein S17-like