IL_5AJ0_271
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ0_271 not in the Motif Atlas
- Geometric match to IL_4V88_464
- Geometric discrepancy: 0.1012
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5AJ0|1|B1|G|1702
5AJ0|1|B1|C|1703
5AJ0|1|B1|C|1704
5AJ0|1|B1|C|1705
*
5AJ0|1|B1|G|1829
5AJ0|1|B1|U|1830
5AJ0|1|B1|A|1831
5AJ0|1|B1|A|1832
5AJ0|1|B1|C|1833
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain An
- 60S ribosomal protein L41
- Chain Bv
- Transfer RNA; tRNA
- Chain Bx
- mRNA
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