3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GCCC*GUAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5AJ0_271 not in the Motif Atlas
Geometric match to IL_4V88_464
Geometric discrepancy: 0.1012
The information below is about IL_4V88_464
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65718.1
Basepair signature
cWW-cSH-cWS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

5AJ0|1|B1|G|1702
5AJ0|1|B1|C|1703
5AJ0|1|B1|C|1704
5AJ0|1|B1|C|1705
*
5AJ0|1|B1|G|1829
5AJ0|1|B1|U|1830
5AJ0|1|B1|A|1831
5AJ0|1|B1|A|1832
5AJ0|1|B1|C|1833

Current chains

Chain B1
18S ribosomal RNA

Nearby chains

Chain A2
Large subunit ribosomal RNA; LSU rRNA
Chain An
60S ribosomal protein L41
Chain Bv
Transfer RNA; tRNA
Chain Bx
mRNA

Coloring options:


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