IL_5AJ0_276

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

5AJ0|1|B1|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_276 not in the Motif Atlas

Geometric match to IL_4V88_469

Geometric discrepancy: 0.1415

The information below is about IL_4V88_469

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5AJ0|1|B1|U|1720
5AJ0|1|B1|U|1721
5AJ0|1|B1|G|1722
*
5AJ0|1|B1|U|1812
5AJ0|1|B1|A|1813

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain AV

60S ribosomal protein L23

Chain An

60S ribosomal protein L41

Chain BX

40S ribosomal protein S23