3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UGAG*CGAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5AJ0_278 not in the Motif Atlas
Homologous match to IL_4V88_471
Geometric discrepancy: 0.1251
The information below is about IL_4V88_471
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.12
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
35

Unit IDs

5AJ0|1|B1|U|1733
5AJ0|1|B1|G|1734
5AJ0|1|B1|A|1735
5AJ0|1|B1|G|1736
*
5AJ0|1|B1|C|1798
5AJ0|1|B1|G|1799
5AJ0|1|B1|A|1800
5AJ0|1|B1|A|1801

Current chains

Chain B1
18S ribosomal RNA

Nearby chains

Chain A2
Large subunit ribosomal RNA; LSU rRNA
Chain AW
60S ribosomal protein L24
Chain BG
40S ribosomal protein S6
Chain BI
40S ribosomal protein S8

Coloring options:


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