IL_5AJ0_281

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_281 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.1775

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

5AJ0|1|B1|C|1742
5AJ0|1|B1|G|1743
5AJ0|1|B1|G|1744
5AJ0|1|B1|A|1745
5AJ0|1|B1|U|1746
*
5AJ0|1|B1|A|1788
5AJ0|1|B1|G|1789
5AJ0|1|B1|A|1790
5AJ0|1|B1|A|1791
5AJ0|1|B1|G|1792

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain AW

60S ribosomal protein L24

Chain BG

40S ribosomal protein S6

Chain BI

40S ribosomal protein S8