IL_5AJ0_282

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCC*GAGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_282 not in the Motif Atlas

Geometric match to IL_8P9A_292

Geometric discrepancy: 0.33

The information below is about IL_8P9A_292

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

5AJ0|1|B1|C|1750
5AJ0|1|B1|C|1751
5AJ0|1|B1|C|1752
*
5AJ0|1|B1|G|1780
5AJ0|1|B1|A|1781
5AJ0|1|B1|G|1782
5AJ0|1|B1|C|1783
5AJ0|1|B1|G|1784

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain AW

60S ribosomal protein L24

Chain BG

40S ribosomal protein S6