IL_5AJ0_290

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUC*GG

Length

6 nucleotides

Bulged bases

5AJ0|1|A2|U|507, 5AJ0|1|A2|U|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_290 not in the Motif Atlas

Geometric match to IL_4YAZ_008

Geometric discrepancy: 0.3887

The information below is about IL_4YAZ_008

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

5AJ0|1|A2|U|506
5AJ0|1|A2|U|507
5AJ0|1|A2|U|508
5AJ0|1|A2|C|509
*
5AJ0|1|A2|G|640
5AJ0|1|A2|G|641

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein L13

Chain Aa

60S ribosomal protein L27a