3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UCC*GGGA
Length
7 nucleotides
Bulged bases
5AJ0|1|B1|G|507
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5AJ0_302 not in the Motif Atlas
Geometric match to IL_3R1C_017
Geometric discrepancy: 0.3507
The information below is about IL_3R1C_017
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10167.6
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
51

Unit IDs

5AJ0|1|B1|U|495
5AJ0|1|B1|C|496
5AJ0|1|B1|C|497
*
5AJ0|1|B1|G|505
5AJ0|1|B1|G|506
5AJ0|1|B1|G|507
5AJ0|1|B1|A|508

Current chains

Chain B1
18S ribosomal RNA

Nearby chains

Chain BE
40S ribosomal protein S4, Y isoform 1
Chain BJ
40S ribosomal protein S9
Chain BY
40S ribosomal protein S24

Coloring options:


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