IL_5AJ0_310

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GG*UCUGU

Length

7 nucleotides

Bulged bases

5AJ0|1|B1|C|1493, 5AJ0|1|B1|U|1494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_310 not in the Motif Atlas

Geometric match to IL_4LFB_045

Geometric discrepancy: 0.3102

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

5AJ0|1|B1|G|1334
5AJ0|1|B1|G|1335
*
5AJ0|1|B1|U|1492
5AJ0|1|B1|C|1493
5AJ0|1|B1|U|1494
5AJ0|1|B1|G|1495
5AJ0|1|B1|U|1496

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BD

40S ribosomal protein S3

Chain BK

40S ribosomal protein S10

Chain BU

40S ribosomal protein S20

Chain Bd

40S ribosomal protein S29