IL_5AJ0_315
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UAUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 5AJ0|1|A2|A|1941
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ0_315 not in the Motif Atlas
- Homologous match to IL_8P9A_282
- Geometric discrepancy: 0.3397
- The information below is about IL_8P9A_282
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
5AJ0|1|A2|U|1938
5AJ0|1|A2|A|1939
5AJ0|1|A2|U|1940
5AJ0|1|A2|A|1941
5AJ0|1|A2|G|1942
5AJ0|1|A2|A|1943
5AJ0|1|A2|C|1944
5AJ0|1|A2|A|1945
5AJ0|1|A2|G|1946
*
5AJ0|1|A2|C|2003
5AJ0|1|A2|C|2004
5AJ0|1|A2|G|2005
5AJ0|1|A2|A|2006
5AJ0|1|A2|A|2007
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AK
- 60S acidic ribosomal protein P0
- Chain AS
- 60S ribosomal protein L18a
- Chain Am
- Ubiquitin-60S ribosomal protein L40
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