IL_5AJ4_015
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGCCAG*CGGUCAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5AJ4|1|AA|C|258, 5AJ4|1|AA|U|260, 5AJ4|1|AA|A|261
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ4_015 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1585
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5AJ4|1|AA|G|241
5AJ4|1|AA|U|242
5AJ4|1|AA|G|243
5AJ4|1|AA|C|244
5AJ4|1|AA|C|245
5AJ4|1|AA|A|246
5AJ4|1|AA|G|247
*
5AJ4|1|AA|C|254
5AJ4|1|AA|G|255
5AJ4|1|AA|G|256
5AJ4|1|AA|U|257
5AJ4|1|AA|C|258
5AJ4|1|AA|A|259
5AJ4|1|AA|U|260
5AJ4|1|AA|A|261
5AJ4|1|AA|C|262
Current chains
- Chain AA
- MITORIBOSOMAL 12S Ribosomal RNA
Nearby chains
- Chain AE
- MITORIBOSOMAL PROTEIN US5M, MRPS5
- Chain AL
- MITORIBOSOMAL PROTEIN US12M, MRPS12
- Chain AX
- MRNA
- Chain AY
- P-SITE AND A-SITE TRNA
- Chain Ai
- MITORIBOSOMAL PROTEIN MS33, MRPS33
Coloring options: