IL_5AJ4_033
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAA*UAAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ4_033 not in the Motif Atlas
- Geometric match to IL_5C5W_001
- Geometric discrepancy: 0.3035
- The information below is about IL_5C5W_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.3
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 41
Unit IDs
5AJ4|1|AA|C|629
5AJ4|1|AA|A|630
5AJ4|1|AA|A|631
5AJ4|1|AA|A|632
*
5AJ4|1|AA|U|652
5AJ4|1|AA|A|653
5AJ4|1|AA|A|654
5AJ4|1|AA|G|655
Current chains
- Chain AA
- MITORIBOSOMAL 12S Ribosomal RNA
Nearby chains
- Chain AB
- MITORIBOSOMAL PROTEIN US2M, MRPS2
- Chain AC
- MITORIBOSOMAL PROTEIN US3M, MRPS24
- Chain AE
- MITORIBOSOMAL PROTEIN US5M, MRPS5
- Chain AI
- MITORIBOSOMAL PROTEIN US9M, MRPS9
- Chain Ak
- MITORIBOSOMAL PROTEIN MS35, MRPS35
Coloring options: