IL_5AJ4_050
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ4_050 not in the Motif Atlas
- Homologous match to IL_5J7L_257
- Geometric discrepancy: 0.0969
- The information below is about IL_5J7L_257
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
5AJ4|1|BA|C|180
5AJ4|1|BA|C|181
5AJ4|1|BA|U|182
*
5AJ4|1|BA|A|191
5AJ4|1|BA|U|192
5AJ4|1|BA|G|193
Current chains
- Chain BA
- MITORIBOSOMAL 16S Ribosomal RNA
Nearby chains
- Chain B5
- MITORIBOSOMAL PROTEIN BL32M, MRPL32
- Chain BF
- MITORIBOSOMAL PROTEIN UL4M, MRPL4
- Chain BP
- MITORIBOSOMAL PROTEIN UL15M, MRPL15
- Chain BU
- MITORIBOSOMAL PROTEIN BL20M, MRPL20
- Chain BV
- MITORIBOSOMAL PROTEIN BL21M, MRPL21
Coloring options: