IL_5AJ4_061
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAG*CC
- Length
- 5 nucleotides
- Bulged bases
- 5AJ4|1|BA|A|478
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ4_061 not in the Motif Atlas
- Homologous match to IL_5J7L_276
- Geometric discrepancy: 0.1989
- The information below is about IL_5J7L_276
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_61258.15
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 41
Unit IDs
5AJ4|1|BA|G|477
5AJ4|1|BA|A|478
5AJ4|1|BA|G|479
*
5AJ4|1|BA|C|586
5AJ4|1|BA|C|587
Current chains
- Chain BA
- MITORIBOSOMAL 16S Ribosomal RNA
Nearby chains
- Chain B3
- MITORIBOSOMAL PROTEIN UL30M, MRPL30
- Chain BU
- MITORIBOSOMAL PROTEIN BL20M, MRPL20
- Chain BV
- MITORIBOSOMAL PROTEIN BL21M, MRPL21
- Chain BW
- MITORIBOSOMAL PROTEIN UL22M, MRPL22
- Chain Bg
- MITORIBOSOMAL PROTEIN ML43, MRPL43
- Chain Bo
- MITORIBOSOMAL PROTEIN ML52, MRPL52
Coloring options: