IL_5AJ4_063

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAG*CAUC

Length

8 nucleotides

Bulged bases

5AJ4|1|BA|A|504

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_063 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.1893

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

5AJ4|1|BA|G|502
5AJ4|1|BA|U|503
5AJ4|1|BA|A|504
5AJ4|1|BA|G|505
*
5AJ4|1|BA|C|519
5AJ4|1|BA|A|520
5AJ4|1|BA|U|521
5AJ4|1|BA|C|522

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain BK

MITORIBOSOMAL PROTEIN UL11M, MRPL11

Chain BQ

MITORIBOSOMAL PROTEIN UL16M, MRPL16

Chain Bq

MITORIBOSOMAL PROTEIN ML54, MRPL54