IL_5AJ4_101

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCCAGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_101 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.2196

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5AJ4|1|BA|C|1452
5AJ4|1|BA|C|1453
5AJ4|1|BA|C|1454
5AJ4|1|BA|A|1455
5AJ4|1|BA|G|1456
5AJ4|1|BA|U|1457
5AJ4|1|BA|A|1458
5AJ4|1|BA|C|1459
*
5AJ4|1|BA|G|1464
5AJ4|1|BA|G|1465
5AJ4|1|BA|A|1466
5AJ4|1|BA|C|1467
5AJ4|1|BA|A|1468
5AJ4|1|BA|A|1469
5AJ4|1|BA|G|1470

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain BO

MITORIBOSOMAL PROTEIN UL14M, MRPL14