IL_5AKA_018

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_018 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0895

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5AKA|1|B|C|239
5AKA|1|B|C|240
5AKA|1|B|A|241
5AKA|1|B|G|242
5AKA|1|B|U|243
5AKA|1|B|A|244
5AKA|1|B|G|245
*
5AKA|1|B|C|253
5AKA|1|B|G|254
5AKA|1|B|A|255
5AKA|1|B|A|256
5AKA|1|B|C|257
5AKA|1|B|G|258

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 3

50S RIBOSOMAL PROTEIN L35

Chain L

50S RIBOSOMAL PROTEIN L15