IL_5AKA_031

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5AKA|1|B|G|801, 5AKA|1|B|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_031 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0728

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5AKA|1|B|G|674
5AKA|1|B|A|675
5AKA|1|B|A|676
5AKA|1|B|A|677
5AKA|1|B|C|678
*
5AKA|1|B|G|799
5AKA|1|B|A|800
5AKA|1|B|G|801
5AKA|1|B|A|802
5AKA|1|B|U|803
5AKA|1|B|A|804
5AKA|1|B|G|805
5AKA|1|B|C|806

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain E

50S RIBOSOMAL PROTEIN L4

Chain L

50S RIBOSOMAL PROTEIN L15