IL_5AKA_041

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGUAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_041 not in the Motif Atlas

Homologous match to IL_7RQB_027

Geometric discrepancy: 0.1399

The information below is about IL_7RQB_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_38862.1

Basepair signature

cWW-L-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5AKA|1|B|G|858
5AKA|1|B|G|859
5AKA|1|B|U|860
5AKA|1|B|A|861
5AKA|1|B|G|862
*
5AKA|1|B|C|915
5AKA|1|B|G|916
5AKA|1|B|A|917
5AKA|1|B|A|918
5AKA|1|B|U|919

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain A

5S ribosomal RNA; 5S rRNA

Chain M

50S RIBOSOMAL PROTEIN L16

Chain W

50S RIBOSOMAL PROTEIN L27