IL_5AKA_046
3D structure
- PDB id
- 5AKA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EM structure of ribosome-SRP-FtsY complex in closed state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 5AKA|1|B|A|1156
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AKA_046 not in the Motif Atlas
- Homologous match to IL_4WF9_036
- Geometric discrepancy: 0.0884
- The information below is about IL_4WF9_036
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.1
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
5AKA|1|B|C|998
5AKA|1|B|U|999
5AKA|1|B|A|1000
5AKA|1|B|A|1001
5AKA|1|B|G|1002
*
5AKA|1|B|C|1153
5AKA|1|B|G|1154
5AKA|1|B|A|1155
5AKA|1|B|A|1156
5AKA|1|B|G|1157
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain A
- 5S ribosomal RNA; 5S rRNA
- Chain Q
- 50S RIBOSOMAL PROTEIN L20
- Chain R
- 50S RIBOSOMAL PROTEIN L21
- Chain Y
- 50S RIBOSOMAL PROTEIN L30
Coloring options: