IL_5AKA_053

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

5AKA|1|B|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_053 not in the Motif Atlas

Geometric match to IL_1MMS_001

Geometric discrepancy: 0.1301

The information below is about IL_1MMS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

5AKA|1|B|G|1059
5AKA|1|B|U|1060
5AKA|1|B|U|1061
5AKA|1|B|G|1062
*
5AKA|1|B|C|1076
5AKA|1|B|A|1077
5AKA|1|B|U|1078
5AKA|1|B|C|1079

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L11