IL_5AKA_054

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

5AKA|1|B|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_054 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.2293

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

5AKA|1|B|G|1087
5AKA|1|B|A|1088
5AKA|1|B|A|1089
5AKA|1|B|A|1090
5AKA|1|B|G|1091
*
5AKA|1|B|C|1100
5AKA|1|B|U|1101
5AKA|1|B|C|1102

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L11