IL_5AKA_057

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5AKA|1|B|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_057 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1485

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5AKA|1|B|C|1208
5AKA|1|B|U|1209
5AKA|1|B|G|1210
5AKA|1|B|C|1211
5AKA|1|B|G|1212
5AKA|1|B|A|1213
5AKA|1|B|A|1214
5AKA|1|B|G|1215
*
5AKA|1|B|U|1234
5AKA|1|B|G|1235
5AKA|1|B|G|1236
5AKA|1|B|A|1237
5AKA|1|B|G|1238

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain Q

50S RIBOSOMAL PROTEIN L20