IL_5AKA_067

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GUUG*CAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUUG,CAAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_067 not in the Motif Atlas

Geometric match to IL_7R9G_002

Geometric discrepancy: 0.2024

The information below is about IL_7R9G_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5AKA|1|B|G|1441
5AKA|1|B|U|1442
5AKA|1|B|U|1443
5AKA|1|B|G|1444
*
5AKA|1|B|C|1547
5AKA|1|B|A|1548
5AKA|1|B|A|1549
5AKA|1|B|C|1550

Current chains

Chain B

23S ribosomal RNA

Nearby chains