IL_5AKA_105

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

5AKA|1|B|G|2576, 5AKA|1|B|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_105 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.1009

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5AKA|1|B|C|2510
5AKA|1|B|U|2511
5AKA|1|B|C|2512
*
5AKA|1|B|G|2574
5AKA|1|B|C|2575
5AKA|1|B|G|2576
5AKA|1|B|A|2577
5AKA|1|B|G|2578

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 0

50S RIBOSOMAL PROTEIN L32

Chain D

50S RIBOSOMAL PROTEIN L3