IL_5AKA_119

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GCGG*UUGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_119 not in the Motif Atlas

Geometric match to IL_8GLP_220

Geometric discrepancy: 0.2335

The information below is about IL_8GLP_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

5AKA|1|7|G|109
5AKA|1|7|C|110
5AKA|1|7|G|111
5AKA|1|7|G|112
*
5AKA|1|7|U|161
5AKA|1|7|U|162
5AKA|1|7|G|163
5AKA|1|7|C|164

Current chains

Chain 7

4.5S ribosomal RNA

Nearby chains