IL_5AKA_126

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_126 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1018

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5AKA|1|B|U|1851
5AKA|1|B|U|1852
5AKA|1|B|A|1853
5AKA|1|B|A|1854
5AKA|1|B|U|1855
5AKA|1|B|U|1856
5AKA|1|B|G|1857
5AKA|1|B|A|1858
5AKA|1|B|U|1859
5AKA|1|B|G|1860
*
5AKA|1|B|U|1882
5AKA|1|B|U|1883
5AKA|1|B|G|1884
5AKA|1|B|A|1885
5AKA|1|B|U|1886
5AKA|1|B|C|1887
5AKA|1|B|G|1888
5AKA|1|B|A|1889
5AKA|1|B|A|1890
5AKA|1|B|G|1891

Current chains

Chain B

23S ribosomal RNA

Nearby chains