IL_5AN9_041

3D structure

PDB id

5AN9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanism of eIF6 release from the nascent 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

5AN9|1|N|G|3278, 5AN9|1|N|A|3279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AN9_041 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.1024

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

5AN9|1|N|C|3212
5AN9|1|N|U|3213
5AN9|1|N|C|3214
*
5AN9|1|N|G|3276
5AN9|1|N|U|3277
5AN9|1|N|G|3278
5AN9|1|N|A|3279
5AN9|1|N|G|3280

Current chains

Chain N

26S RIBOSOMAL RNA

Nearby chains

Chain A

60S RIBOSOMAL PROTEIN L3

Chain E

60S RIBOSOMAL PROTEIN L23

Chain J

RIBOSOME MATURATION PROTEIN SBDS