IL_5AN9_053

3D structure

PDB id

5AN9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanism of eIF6 release from the nascent 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGG*UAUC

Length

8 nucleotides

Bulged bases

5AN9|1|N|G|1471

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AN9_053 not in the Motif Atlas

Geometric match to IL_5J7L_285

Geometric discrepancy: 0.2288

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

5AN9|1|N|G|1469
5AN9|1|N|U|1470
5AN9|1|N|G|1471
5AN9|1|N|G|1472
*
5AN9|1|N|U|1486
5AN9|1|N|A|1487
5AN9|1|N|U|1488
5AN9|1|N|C|1489

Current chains

Chain N

26S RIBOSOMAL RNA

Nearby chains

Chain C

60S ACIDIC RIBOSOMAL PROTEIN P0

Chain D

60S RIBOSOMAL PROTEIN L12