IL_5APN_076

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

5APN|1|5|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5APN_076 not in the Motif Atlas

Homologous match to IL_5TBW_071

Geometric discrepancy: 0.0989

The information below is about IL_5TBW_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

5APN|1|5|U|1694
5APN|1|5|U|1695
5APN|1|5|A|1696
5APN|1|5|A|1697
5APN|1|5|C|1698
*
5APN|1|5|G|1747
5APN|1|5|G|1748
5APN|1|5|A|1749
5APN|1|5|A|1750
5APN|1|5|G|1751
5APN|1|5|A|1752

Current chains

Chain 5

25S rRNA

Nearby chains

Chain g

60S ribosomal protein L34-A

Chain k

60S ribosomal protein L38