IL_5APN_139

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5APN_139 not in the Motif Atlas

Homologous match to IL_5TBW_128

Geometric discrepancy: 0.2105

The information below is about IL_5TBW_128

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5APN|1|5|C|3235
5APN|1|5|U|3236
5APN|1|5|U|3237
5APN|1|5|G|3238
*
5APN|1|5|C|3249
5APN|1|5|U|3250
5APN|1|5|U|3251
5APN|1|5|G|3252

Current chains

Chain 5

25S rRNA

Nearby chains

Chain O

60S ribosomal protein L16-A