IL_5APN_146
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5APN_146 not in the Motif Atlas
- Homologous match to IL_8C3A_141
- Geometric discrepancy: 0.2229
- The information below is about IL_8C3A_141
- Detailed Annotation
- Double sheared; A in syn
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
5APN|1|5|A|3342
5APN|1|5|G|3343
5APN|1|5|A|3344
5APN|1|5|G|3345
*
5APN|1|5|C|3360
5APN|1|5|G|3361
5APN|1|5|A|3362
5APN|1|5|U|3363
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
- Chain W
- 60S ribosomal protein L24-A
- Chain y
- Cytoplasmic 60S subunit biogenesis factor REI1
Coloring options: