IL_5APN_147
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- CC*GUUG
- Length
- 6 nucleotides
- Bulged bases
- 5APN|1|5|U|3354, 5APN|1|5|U|3355
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5APN_147 not in the Motif Atlas
- Homologous match to IL_8C3A_142
- Geometric discrepancy: 0.2601
- The information below is about IL_8C3A_142
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_82107.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
5APN|1|5|C|3349
5APN|1|5|C|3350
*
5APN|1|5|G|3353
5APN|1|5|U|3354
5APN|1|5|U|3355
5APN|1|5|G|3356
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain y
- Cytoplasmic 60S subunit biogenesis factor REI1
Coloring options: