3D structure

PDB id
5APN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.91 Å

Loop

Sequence
CC*GUUG
Length
6 nucleotides
Bulged bases
5APN|1|5|U|3354, 5APN|1|5|U|3355
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5APN_147 not in the Motif Atlas
Homologous match to IL_8C3A_142
Geometric discrepancy: 0.2601
The information below is about IL_8C3A_142
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_82107.1
Basepair signature
cWW-cWW
Number of instances in this motif group
34

Unit IDs

5APN|1|5|C|3349
5APN|1|5|C|3350
*
5APN|1|5|G|3353
5APN|1|5|U|3354
5APN|1|5|U|3355
5APN|1|5|G|3356

Current chains

Chain 5
25S rRNA

Nearby chains

Chain y
Cytoplasmic 60S subunit biogenesis factor REI1

Coloring options:


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