IL_5APN_153
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 5APN|1|7|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5APN_153 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.0894
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5APN|1|7|A|72
5APN|1|7|C|73
5APN|1|7|C|74
5APN|1|7|G|75
5APN|1|7|A|76
5APN|1|7|G|77
5APN|1|7|U|78
5APN|1|7|A|79
5APN|1|7|G|80
*
5APN|1|7|C|100
5APN|1|7|G|101
5APN|1|7|A|102
5APN|1|7|A|103
5APN|1|7|A|104
5APN|1|7|C|105
5APN|1|7|U|106
Current chains
- Chain 7
- 5S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 60S ribosomal protein L7-A
- Chain I
- 60S ribosomal protein L10
- Chain S
- 60S ribosomal protein L20-A
- Chain T
- 60S ribosomal protein L21-A
Coloring options: