3D structure

PDB id
5APN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.91 Å

Loop

Sequence
ACGCAGCGAAAUGCGAUACGU*AAUCU
Length
26 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5APN_155 not in the Motif Atlas
Geometric match to IL_5TBW_144
Geometric discrepancy: 0.0881
The information below is about IL_5TBW_144
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_44998.1
Basepair signature
cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
Number of instances in this motif group
2

Unit IDs

5APN|1|8|A|44
5APN|1|8|C|45
5APN|1|8|G|46
5APN|1|8|C|47
5APN|1|8|A|48
5APN|1|8|G|49
5APN|1|8|C|50
5APN|1|8|G|51
5APN|1|8|A|52
5APN|1|8|A|53
5APN|1|8|A|54
5APN|1|8|U|55
5APN|1|8|G|56
5APN|1|8|C|57
5APN|1|8|G|58
5APN|1|8|A|59
5APN|1|8|U|60
5APN|1|8|A|61
5APN|1|8|C|62
5APN|1|8|G|63
5APN|1|8|U|64
*
5APN|1|8|A|96
5APN|1|8|A|97
5APN|1|8|U|98
5APN|1|8|C|99
5APN|1|8|U|100

Current chains

Chain 8
5.8S rRNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain X
60S ribosomal protein L25
Chain h
60S ribosomal protein L35-A
Chain j
60S ribosomal protein L37-A
Chain l
60S ribosomal protein L39
Chain x
Probable metalloprotease ARX1

Coloring options:


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