IL_5APN_155
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5APN_155 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0881
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
5APN|1|8|A|44
5APN|1|8|C|45
5APN|1|8|G|46
5APN|1|8|C|47
5APN|1|8|A|48
5APN|1|8|G|49
5APN|1|8|C|50
5APN|1|8|G|51
5APN|1|8|A|52
5APN|1|8|A|53
5APN|1|8|A|54
5APN|1|8|U|55
5APN|1|8|G|56
5APN|1|8|C|57
5APN|1|8|G|58
5APN|1|8|A|59
5APN|1|8|U|60
5APN|1|8|A|61
5APN|1|8|C|62
5APN|1|8|G|63
5APN|1|8|U|64
*
5APN|1|8|A|96
5APN|1|8|A|97
5APN|1|8|U|98
5APN|1|8|C|99
5APN|1|8|U|100
Current chains
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
- Chain x
- Probable metalloprotease ARX1
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