IL_5APO_020
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- GAAUGUAG*UAUUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 5APO|1|5|U|534||||P_1, 5APO|1|5|U|558||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5APO_020 not in the Motif Atlas
- Homologous match to IL_5TBW_020
- Geometric discrepancy: 0.0863
- The information below is about IL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5APO|1|5|G|531||||P_1
5APO|1|5|A|532||||P_1
5APO|1|5|A|533||||P_1
5APO|1|5|U|534||||P_1
5APO|1|5|G|535||||P_1
5APO|1|5|U|536||||P_1
5APO|1|5|A|537||||P_1
5APO|1|5|G|538||||P_1
*
5APO|1|5|U|553||||P_1
5APO|1|5|A|554||||P_1
5APO|1|5|U|555||||P_1
5APO|1|5|U|556||||P_1
5APO|1|5|A|557||||P_1
5APO|1|5|U|558||||P_1
5APO|1|5|A|559||||P_1
5APO|1|5|G|560||||P_1
5APO|1|5|C|561||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain M
- 60S ribosomal protein L14-A
- Chain S
- 60S ribosomal protein L20-A
- Chain q
- 60S acidic ribosomal protein P0
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