IL_5APO_028
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 5APO|1|5|A|933||||P_1, 5APO|1|5|G|937||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5APO_028 not in the Motif Atlas
- Homologous match to IL_5TBW_028
- Geometric discrepancy: 0.1027
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
5APO|1|5|G|805||||P_1
5APO|1|5|A|806||||P_1
5APO|1|5|A|807||||P_1
5APO|1|5|A|808||||P_1
5APO|1|5|G|809||||P_1
*
5APO|1|5|C|931||||P_1
5APO|1|5|U|932||||P_1
5APO|1|5|A|933||||P_1
5APO|1|5|G|934||||P_1
5APO|1|5|U|935||||P_1
5APO|1|5|A|936||||P_1
5APO|1|5|G|937||||P_1
5APO|1|5|C|938||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain a
- 60S ribosomal protein L28
- Chain j
- 60S ribosomal protein L37-A
Coloring options: