IL_5APO_054
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 5APO|1|5|A|1221||||P_1
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5APO_054 not in the Motif Atlas
- Homologous match to IL_8C3A_057
- Geometric discrepancy: 0.1487
- The information below is about IL_8C3A_057
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
5APO|1|5|U|1218||||P_1
5APO|1|5|C|1219||||P_1
5APO|1|5|U|1220||||P_1
5APO|1|5|A|1221||||P_1
5APO|1|5|G|1222||||P_1
5APO|1|5|A|1223||||P_1
5APO|1|5|C|1224||||P_1
5APO|1|5|A|1225||||P_1
5APO|1|5|G|1226||||P_1
*
5APO|1|5|C|1283||||P_1
5APO|1|5|C|1284||||P_1
5APO|1|5|G|1285||||P_1
5APO|1|5|A|1286||||P_1
5APO|1|5|A|1287||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain S
- 60S ribosomal protein L20-A
- Chain m
- Ubiquitin-60S ribosomal protein L40
- Chain q
- 60S acidic ribosomal protein P0
Coloring options: