IL_5APO_061
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5APO_061 not in the Motif Atlas
- Homologous match to IL_5TBW_061
- Geometric discrepancy: 0.0915
- The information below is about IL_5TBW_061
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
5APO|1|5|G|1444||||P_1
5APO|1|5|U|1445||||P_1
5APO|1|5|A|1446||||P_1
5APO|1|5|G|1447||||P_1
5APO|1|5|U|1448||||P_1
5APO|1|5|A|1449||||P_1
5APO|1|5|G|1450||||P_1
*
5APO|1|5|C|2354||||P_1
5APO|1|5|G|2355||||P_1
5APO|1|5|A|2356||||P_1
5APO|1|5|A|2357||||P_1
5APO|1|5|A|2358||||P_1
5APO|1|5|C|2359||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain y
- CYTOPLASMIC 60S SUBUNIT BIOGENESIS FACTOR REI1
Coloring options: