IL_5APO_075
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 5APO|1|5|U|1716||||P_1, 5APO|1|5|A|1729||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5APO_075 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.1177
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
5APO|1|5|C|1711||||P_1
5APO|1|5|G|1712||||P_1
5APO|1|5|G|1713||||P_1
5APO|1|5|A|1714||||P_1
5APO|1|5|A|1715||||P_1
5APO|1|5|U|1716||||P_1
5APO|1|5|U|1717||||P_1
*
5APO|1|5|G|1727||||P_1
5APO|1|5|G|1728||||P_1
5APO|1|5|A|1729||||P_1
5APO|1|5|G|1730||||P_1
5APO|1|5|A|1731||||P_1
5APO|1|5|U|1732||||P_1
5APO|1|5|G|1733||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
- Chain Z
- 60S ribosomal protein L27-A
- Chain c
- 60S ribosomal protein L30
- Chain p
- 60S ribosomal protein L43-A
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